Active tracks

Favourite tracks

Search results

Track order

    You have no favourite tracks. Use the star icon to add tracks to your favourites

    Sequence and assembly

    Enable/disable all tracks
    • Contigs
      Track showing underlying assembly contigs.
    • Sequence
      Track showing sequence in both directions. Only displayed at 1Kb and below.

    Genes and transcripts

    Genes

    • Genes
      This track comprises multiple analyses; RNA genes produced by filtering predictions from tRNAscan-SE v1.23.; RNA genes produced by filtering alignments of Rfam (release 12.2) covariance models.; Gene annotation by Oryza Genome Evolution project (OGE) through MAKER gene annotation pipeline.

    Prediction transcripts

    mRNA and protein alignments

    Enable/disable all mRNA alignments

      EST alignments

        Enable/disable all RNA alignments

          Comparative genomics

          Multiple alignments

            Enable/disable all BLASTz/LASTz alignments
              Enable/disable all Pairwise alignment

                Repeat regions

                Enable/disable all tracks

                  Information and decorations

                  Enable/disable all tracks
                  • Scale bar ()
                    Shows the scalebar
                  • Ruler ()
                    Shows the length of the region being displayed
                  • Alignment Difference Legend
                  • Gene Legend
                  • Display in-track labels
                  • Highlight current feature
                  • Disabled track summary ()
                    Show counts of number of tracks turned off by the user
                  • Information ()
                    Details of the region shown in the image

                  Display options

                  Looking for more data? Search the Trackhub Registry for external sources of annotation

                  Key

                  • Track style
                  • Forward strand
                  • Reverse strand
                  • Favourite track
                  • Track information
                  • External data
                  • User-added track

                  Please note that the content of external tracks is not the responsibility of the Ensembl project.

                  URL-based tracks may either slow down your ensembl browsing experience OR may be unavailable as these are served and stored from other servers elsewhere on the Internet.